PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID PH01003107G0070
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Bambusoideae; Arundinarodae; Arundinarieae; Arundinariinae; Phyllostachys
Family ERF
Protein Properties Length: 246aa    MW: 26271 Da    PI: 4.9944
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PH01003107G0070genomeICBRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.94.5e-1767115355
              AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                      y+GVr +  +g+Wv+eIr+p++   + r++lg+f  +e+Aa+a++ a+++++g
  PH01003107G0070  67 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPCPEMAARAHDVAALSIKG 115
                      9****998.**********843...6***********************9987 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008475.3E-1265115IPR001471AP2/ERF domain
SuperFamilySSF541712.16E-2066124IPR016177DNA-binding domain
PROSITE profilePS5103222.866123IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-3166124IPR001471AP2/ERF domain
SMARTSM003801.4E-3366129IPR001471AP2/ERF domain
PRINTSPR003673.1E-96778IPR001471AP2/ERF domain
CDDcd000184.68E-2967125No hitNo description
PRINTSPR003673.1E-989105IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MATSEQCSES SSTTTSSYTS YSSPSTSSCS RASPSADAGG KKQHGKRKRA RDDAGGADAE  60
AAAPPAYRGV RMRAWGKWVS EIREPRKKSR IWLGTFPCPE MAARAHDVAA LSIKGARAVL  120
NFPDLAPVLP RPASLSPRDV QAAAARAAIM QHHVSASTYS PAAPASVDST APADDQSAAR  180
DEPEPEPSRE NEQQQPAQVE VAELVFDELA PLWVEDVAEF GPSDHCWTAY DGLDTVGFQP  240
LLWEY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-1567123663ATERF1
3gcc_A2e-1567123663ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankDQ3538521e-100DQ353852.1 Triticum aestivum AP2 domain transcription factor TaDREB2 mRNA, complete cds.
GenBankGU7850081e-100GU785008.1 Triticum turgidum subsp. durum drought responsive element binding transcription factor 2 (DREB2) gene, promoter region and complete cds.
GenBankHG6703061e-100HG670306.1 Triticum aestivum chromosome 3B, genomic scaffold, cultivar Chinese Spring.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015644400.13e-86PREDICTED: ethylene-responsive transcription factor TINY
TrEMBLA0A0E0JFA02e-95A0A0E0JFA0_ORYPU; Uncharacterized protein
STRINGLOC_Os01g10370.11e-85(Oryza sativa Japonica Group)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.11e-41ERF family protein